Publications

* Co-first Author (Equal Contribution), 📧 Corresponding Author

Preprint

$\text{Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development}$
Tengfei Ma, Xuan Lin, Tianle Li, Chaoyi Li, Long Chen, Peng Zhou, Xibao Cai, Xinyu Yang, Daojian Zeng, Dongsheng Cao, Xiangxiang Zeng
Preprint, 2024, Under Review
[Video] [URL]

$\text{KGExplainer: Towards Exploring Connected Subgraph Explanations for Knowledge Graph Completion}$
Tengfei Ma, Xiang Song, Wen Tao, Mufei Li, Jiani Zhang, Xiaoqin Pan, Jianxin Lin, Bosheng Song, Xiangxiang Zeng
Preprint, 2024
[Code] [URL]

Published

$\text{S2DN: Learning to Denoise Unconvincing Knowledge for Inductive Knowledge Graph Completion}$
Tengfei Ma, Yujie Chen, Liang Wang, Xuan Lin, Bosheng Song, Xiangxiang Zeng
Thirty-Ninth AAAI Conference on Artificial Intelligence (AAAI-25, Oral), 2024, CCF A
[Code] [URL]

$\text{Learning to Denoise Unreliable Interactions for Link Prediction on Biomedical Knowledge Graph}$
Tengfei Ma, Yujie Chen, Wen Tao, Dashun Zheng, Xuan Lin, Patrick Cheong-lao Pang, Yiping Liu, Yijun Wang, Bosheng Song, Xiangxiang Zeng
IEEE Transactions on Knowledge and Data Engineering (TKDE), 2024, CCF A
[Code] [URL]

$\text{CausalMed: Causality-Based Personalized Medication Recommendation Centered on Patient Health State}$
Xiang Li, Shunpan Liang, Yu Lei, Chen Li, Yulei Hou, Tengfei Ma📧
CIKM, 2024, CCF-B
[URL]

$\text{TO-UGDA: target-oriented unsupervised graph domain adaptation}$
Zhuo Zeng, Jianyu Xie, Zhijie Yang, Tengfei Ma, Duanbing Chen
Scientific Reports, 2024, SCI-2
[URL]

$\text{StratMed: Relevance Stratification for Low-resource Medication Recommendation}$
Xiang Li, Shunpan Liang, Yulei Hou, Tengfei Ma📧
Knowledge-Based Systems (KBS), 2023, SCI-1 Top
[Code] [URL]

$\text{KG-MTL: Knowledge graph enhanced multi-task learning for molecular interaction}$
Tengfei Ma, Xuan Lin, Bosheng Song, S Yu Philip, Xiangxiang Zeng
IEEE Transactions on Knowledge and Data Engineering (TKDE), 2022, CCF A
[Code] [URL]

$\text{MUFFIN: multi-scale feature fusion for drug–drug interaction prediction}$
Yujie Chen, Tengfei Ma, Xixi Yang, Jianmin Wang, Bosheng Song, Xiangxiang Zeng
Bioinformatics, 2021, SCI-2 Top
[Code] [URL]

$\text{Repurpose open data to discover therapeutics for COVID-19 using deep learning}$
Xiangxiang Zeng*, Xiang Song*, Tengfei Ma*, Xiaoqin Pan, Yadi Zhou, Yuan Hou, Zheng Zhang, Kenli Li, George Karypis, Feixiong Cheng
Journal of proteome research, 2020, SCI-2
[Code] [URL]

$\text{KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction}$
Xuan Lin, Zhe Quan, Zhi-Jie Wang, Tengfei Ma, Xiangxiang Zeng
IJCAI, 2020, CCF A
[Code] [URL]