Tengfei Ma

Tengfei Ma

Devoted to machine learning and its application to biology

Publications

This page highlights my first-author and corresponding-author publications.

馃摟 Corresponding author

Selected First-Author Publications

  1. SafeDrug: A Benchmark Dataset for Safety-Critical Pharmacological Reasoning in LLMs
    Tengfei Ma, Yushan Yang, HOU Jiahao, Yujie Chen, Guanghui Ye, Xuanbai Ren, Yiping Liu, Bosheng Song, Xiangxiang Zeng
    NeurIPS 2026 (ED track), CCF-A 路 Project Page

  2. Expanding Knowledge Boundaries via LLM-Grounded Alignment for Drug Combination Recommendation
    Tengfei Ma, Yuqin He, Zhonghao Ren, Bosheng Song, Qian Li, Xiangxiang Zeng
    KDD 2026 (AI4Science), CCF-A 路 Code 路 Paper

  3. Self-supervised Blending Structural Context of Visual Molecules for Robust Drug Interaction Prediction
    Tengfei Ma, Kun Chen, Yongsheng Zang, Yujie Chen, Xuanbai Ren, Bosheng Song, Hongxin Xiang, Yiping Liu, Xiangxiang Zeng
    NeurIPS 2025, CCF-A 路 Code 路 Paper

  4. Towards Synergistic Path-based Explanations for Knowledge Graph Completion: Exploration and Evaluation
    Tengfei Ma, Xiang Song, Wen Tao, Mufei Li, Jiani Zhang, Xiaoqin Pan, Yijun Wang, Bosheng Song, Xiangxiang Zeng
    ICLR 2025 (Full; acceptance rate: 32.08%), CAAI-A 路 Code 路 Paper

  5. S2DN: Learning to Denoise Unconvincing Knowledge for Inductive Knowledge Graph Completion
    Tengfei Ma, Yujie Chen, Liang Wang, Xuan Lin, Bosheng Song, Xiangxiang Zeng
    AAAI 2025 (Oral; acceptance rate: 4.63%), CCF-A 路 Code 路 Paper

  6. Learning to Denoise Unreliable Interactions for Link Prediction on Biomedical Knowledge Graph
    Tengfei Ma, Yujie Chen, Wen Tao, Dashun Zheng, Xuan Lin, Patrick Cheong-Iao Pang, Yiping Liu, Yijun Wang, Bosheng Song, Xiangxiang Zeng
    IEEE Transactions on Knowledge and Data Engineering (TKDE), 2024, CCF-A 路 Code 路 Paper

  7. KG-MTL: Knowledge Graph Enhanced Multi-task Learning for Molecular Interaction
    Tengfei Ma, Xuan Lin, Bosheng Song, Philip S. Yu, Xiangxiang Zeng
    IEEE Transactions on Knowledge and Data Engineering (TKDE), 2022, CCF-A 路 Code 路 Paper

Selected Corresponding-Author Publications

  1. Mitigating Knowledge Conflicts of Retrieval-Augmented Generation through Dual-Stage Confidence Measurement in Semantic Space
    Jia Zhang, Zhiheng Zhang, Zeao Ji, Tengfei Ma馃摟, Daojian Zeng馃摟
    COLM 2026 路 Corresponding author 路 Code 路 Paper

  2. Expert-Inspired Multi-Agent Coordination for Multi-Objective Molecular Optimization
    Daojian Zeng, Tianle Li, Tengfei Ma馃摟, Jiahao Yang, Jiacai Yi, Xieping Gao, Lincheng Jiang馃摟, Xiangxiang Zeng
    AAAI 2026 (Oral; acceptance rate: 17.6%), CCF-A 路 Corresponding author 路 Code 路 Paper

  3. VQH-AM: Vector Quantization-Augmented Heterogeneous Graph Learning for Antibody-Antigen Affinity Maturation Prediction
    Zhuowen Zhen, Tengfei Ma馃摟, Jiaxuan Li, Dashun Zheng, Patrick Cheong-Iao Pang, Yiping Liu, Xiangxiang Zeng
    BIBM 2025, Regular Paper, CCF-B 路 Corresponding author 路 Code 路 Paper

  4. Predicting Drug-Drug Interaction via Dual-Drugs Visual Representation
    Lingxuan Xie, Tengfei Ma馃摟, Yuqin He, Yiping Liu, Xiangxiang Zeng
    Journal of Chemical Information and Modeling (JCIM), 2025, SCI-2 (Top) 路 Corresponding author 路 Code 路 Paper

  5. CausalMed: Causality-Based Personalized Medication Recommendation Centered on Patient Health State
    Xiang Li, Shunpan Liang馃摟, Yu Lei, Chen Li, Yulei Hou, Tengfei Ma馃摟
    CIKM 2024, CCF-B 路 Corresponding author 路 Code 路 Paper